Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015904236.1_cds_XP_016454379.1_48411
CDS Infomation

[gene=LOC107778609] [db_xref=GeneID:107778609] [protein=pentatricopeptide repeat-containing protein At3g59040-like] [protein_id=XP_016454379.1] [location=join(15845..15909,16671..16983,17404..17694,19585..19833,20312..20436,21215..21313,22052..22682)] [gbkey=CDS]
Sequence

ATGCCTCAAACAATGATGATTTTCCTCAAACCATTCATTTCAGCTCCCTCTTCTTCCGTC
TGGAGTAAATCAAATAGTGGTGGGAATTTATTGGATACAAATGTTAAAATATGTAAAAGA
GCAGAAGTGGTGTGTCAAGGCATGCTGGCACCGAGAAAGTTCATGCAGAAGAGGAAGAAA
GTAGAGGTTTTCAAGAGCGCCGAGGATGAAGCAGACCAGAAAAACTGGAGAAAGATGATG
AATGAAATTGAAGAAACTGGTTCTGCTGTTTCGGTGCTGAGAAGCCAGAGGTCCAAGAAC
CAGGATCTTCCCAAGGACCTTGTTCTTGGAAGCTTGGTTCGATTTAAACAGCTTAAGAAG
TGGAACCTTGTTAGTGAGATTCTTGAATGGCTTCAAACTCAGCATTGGTGGGATTTTAAT
GAAATGGACTTTCTGATGCTTATTACGGCCTACGGGAAGGAAGGGGAATTCAGTAAAGCT
GAAAGCATTTTAGGCTACATGAATAAGAAGGGCTATTCCCCGAATGTGATATCTCACACT
GCTCTGATGGAGGCATATGGAAAAGGAGGTCAGAACAGTAAGGCAGAAGCGATATTTCGG
AGAATGCAAACTTCAGGCCCCGAGCCTTCTGCTATTACATACCAAATCATTCTCAAAATC
TTTGTTGAGGGTGACAAATTTAATGAAGCTCAAGAAGTCTTTGAAGCTCTTATGGATATG
GATGCACCTCCGCTAAAACCAGATCAGAAAATGTTCCACATGATGATCTATATGTATAAG
AAGGCTGGAAAATATGAGAAAGCTCGTCAGCTGTTTTCTTTGATGGCCGAGCGAGGAATT
CCACAAAATACGGTTACTTACAACAGTTTGATGTCGTTTGAGACTAACTACAAGGAGGTT
GCAAACATTTATGATCAGATGCAAAGAGCTGGTCTTCGACCTGATGTTGTTAGCTACGCC
CTTCTCATTAGTGCATATGGAAAGGCTAGAAGAGAAGAGGAGGCACTAGCTGTTTTTGAG
GAAATGCTTGATGCTGGCGTCAGGCCAACACAGAAATCTTACAACATCTTGCTAGATGCA
TTTGCAATCTCAGGAATGGTGGAGCAAGCCCGAACTGTCTTCAAAAGCATGCGAAGAGAC
AGATGTAACCCCGACCTTTGCTCATACACAACAATGCTATCAGCTTATATTAATGCACCA
GATATGGAGGGTGCTGAGAAATTTTTCAGAAGAATAAAACAGGATGGATTGGAGCCCAAT
GTTGTCACATACGGCACACTGATTAAGGGATATGCAAAAATAAATGGCCTCGAAAAGATG
ATGGAGAAATATGAACAAATGCGGGTCCATGGTATCAAGGCTAACCAAACTATCTTCACT
ACAATCATGGACGCGTATGGTAGGAATAAGGATTTTGGCAGTGCCGTTTCTTGGTTCAAC
GAGATGGTATCTTCCGGGGTATCTCCTGATCAAAAAGCAAAGAACATTCTCTTGTCCTTG
GCAAAAACATCGGAAGAACAGATGGAAGCTAAGCAGCTTACAGGATGTGTCAACGATCTG
ATAGTTGACAGAATTCCCAGTTACATCAATAATAATGACGAAGACGACTATGGCGGTGAT
GGTAGTAGTGGTGATGACGAAGACGACTACGACGATGATGATGGTAGCGGTGATAATGAA
GACTATGATGATGACAATAATGCAAAAATAAGCATTTTGTCAGGAGCAAATTTGGATCAA
CTAAAAGTTAGTGGTCGTGCATCTCAGACGTAA

Peptide Sequence

PEP ID

XP_016454379.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Nicotiana tabacum]
Sequence

MPQTMMIFLKPFISAPSSSVWSKSNSGGNLLDTNVKICKRAEVVCQGMLAPRKFMQKRKK
VEVFKSAEDEADQKNWRKMMNEIEETGSAVSVLRSQRSKNQDLPKDLVLGSLVRFKQLKK
WNLVSEILEWLQTQHWWDFNEMDFLMLITAYGKEGEFSKAESILGYMNKKGYSPNVISHT
ALMEAYGKGGQNSKAEAIFRRMQTSGPEPSAITYQIILKIFVEGDKFNEAQEVFEALMDM
DAPPLKPDQKMFHMMIYMYKKAGKYEKARQLFSLMAERGIPQNTVTYNSLMSFETNYKEV
ANIYDQMQRAGLRPDVVSYALLISAYGKARREEEALAVFEEMLDAGVRPTQKSYNILLDA
FAISGMVEQARTVFKSMRRDRCNPDLCSYTTMLSAYINAPDMEGAEKFFRRIKQDGLEPN
VVTYGTLIKGYAKINGLEKMMEKYEQMRVHGIKANQTIFTTIMDAYGRNKDFGSAVSWFN
EMVSSGVSPDQKAKNILLSLAKTSEEQMEAKQLTGCVNDLIVDRIPSYINNNDEDDYGGD
GSSGDDEDDYDDDDGSGDNEDYDDDNNAKISILSGANLDQLKVSGRASQT

Transcript Sequence

Gene sequence data has not been registered.